PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10031846m
Common NameCICLE_v10031846mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family RAV
Protein Properties Length: 378aa    MW: 41913.2 Da    PI: 9.0747
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10031846mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.81.5e-1469117155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+ykGV   + +grW A+I++      ++r++lg+f  +eeAa+a++ a+++++g
  Ciclev10031846m  69 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARAYDIAAQRFRG 117
                      89****9888.8*********3.....5*************************98 PP

2B3101.64.4e-32207306196
                      EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+k+ tpsdv+k++rlv+pk++ae+h    +g++ ++  l +ed +g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++   ++
  Ciclev10031846m 207 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqSGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDR 300
                      89****************************77888999*************************************************8766777 PP

                      ..EEEE CS
               B3  91 elvvkv 96 
                      +l++ +
  Ciclev10031846m 301 QLYIDW 306
                      777766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-1869125IPR016177DNA-binding domain
PfamPF008472.1E-969117IPR001471AP2/ERF domain
CDDcd000183.96E-2769124No hitNo description
Gene3DG3DSA:3.30.730.102.8E-2170126IPR001471AP2/ERF domain
PROSITE profilePS5103220.65370125IPR001471AP2/ERF domain
SMARTSM003801.4E-2970131IPR001471AP2/ERF domain
PRINTSPR003674.8E-57182IPR001471AP2/ERF domain
PRINTSPR003674.8E-591107IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.3E-40202310IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-30206308IPR015300DNA-binding pseudobarrel domain
CDDcd100179.17E-29206304No hitNo description
PROSITE profilePS5086314.48207310IPR003340B3 DNA binding domain
SMARTSM010194.9E-25207310IPR003340B3 DNA binding domain
PfamPF023622.5E-29207307IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MKREEMDGSC MDESTTTDSA STSPPITFPA SIPPTKSPES LCRVGSGASS VILDSEAGVE  60
AESRKLPSSK YKGVVPQPNG RWGAQIYEKH QRVWLGTFNE EEEAARAYDI AAQRFRGRDA  120
VTNFKQMSCA GTSSDEGDIE MAFLSSHSKS EIVDMLRKHT YNDELEQSKR NYGLDANGKR  180
VIKHGEGDGV ATAFGSDRVL KARDQLFEKA VTPSDVGKLN RLVIPKQHAE KHFPLQSGST  240
SKGLLLNFED VTGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKNLKAGDIV SFHRSTGGDR  300
QLYIDWKART GPVENPVEPV QMMRLFGVNI FKIPGNGLVG VDKIGCNINN NNDGKRLREM  360
ELLSIECSKK QRMIGAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-5920431111119DNA-binding protein RAV1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.68750.0abscission zone| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00025PBMTransfer from AT1G68840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437734.10.0hypothetical protein CICLE_v10031846mg
SwissprotP822801e-155RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLV4VES50.0V4VES5_9R
STRINGVIT_01s0011g03070.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-155related to ABI3/VP1 2